Take a look at the Skaha pullover from Nunatak. You can have it custom made for you. With or without a hood, he does multicam, custom sleeve length, back length, overfill, kangaroo pocket, inside pockets. He does it in down or Apex, custom either way.I use most of my stuff hunting whitetail and predators in the midwest and on western trips. What pieces go depends on the expected weather and hunting plan.
To the original question I generally put a shell over the puffy but not always. If I'm going to be moving a few hundred yards and glassing regularly I'll use the puffy as the outer layer so it's easier to take off and put on.
The Catalyst mentioned earlier has pretty slim fitting sleeves. The only puffy layer that works well under mine is a FL Uncompaghre vest. If I was planning around that I'd size the puffy to go over it. I actually seldom use the Catalyst unless I don't need to layer much under it and I really want to be quiet.
My favorite all around softshell and the one I use the most later season is still the Kryptek Dalibor 2. I like the Sitka Mountain jacket too if I don't need a hood and just need a wind stopper.
I have a FL Seak and Sitka Cloudburst for hard shells. Both work well but are fairly loud. I probably prefer the Seak of the two.
The most wind resistant fleece I've used is the Kuiu Peloton 240 hoody. I almost always have that on when hunting, it's the piece I layer around.
The quietest puffy I've used is the Kenai from Kuiu. It's also the least wind resistant. The Kifaru LPP is the warmest I've tried but I want to try a warmer down puffy. I whitetail hunt in KS in December and want a puffy warm enough for that but that I can also use out west if it's really cold. Something a step warmer than the Kifaru LPP. I'm leaning toward the FL Chamberlain since it has the most down. I got the Kuiu Superdown Pro pants and used them this December whitetail season. They are great to put on once I'm at my hunting spot and really helped keep me warm and blocked wind. I'd like a puffy jacket and pants that compress well enough to pack that I can put on when I'm going to be stationary for several hours, then layer for hiking under them.
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